About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19262NETRIN RECEPTOR UNC5
Paelopatides19263-
Paelopatides19264-
Paelopatides19265NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
Paelopatides19266-
Paelopatides19267ENZYMATIC POLYPROTEIN-RELATED
Paelopatides19268EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Paelopatides19269ATP-DEPENDENT DNA HELICASE
Paelopatides19270RETROTRANSPOSON
Paelopatides19271PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides19272SI:CH211-108C17.2-RELATED-RELATED
Paelopatides19273ZGC:195170
Paelopatides19274PROTEIN CBG26694
Paelopatides19275ENZYMATIC POLYPROTEIN-RELATED
Paelopatides19276ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides19277ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19278FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides1927952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides19280RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
Paelopatides19281WD-40 REPEAT PROTEIN
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