About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19621ZGC:195170
Paelopatides19623OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides19624-
Paelopatides19625HERMANSKY-PUDLAK SYNDROME PROTEIN 1
Paelopatides19626HOMEOBOX PROTEIN ENGRAILED
Paelopatides196275'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT
Paelopatides19628-
Paelopatides19629ENDONUCLEASE-RELATED
Paelopatides19630ENDONUCLEASE-RELATED
Paelopatides19631AMINO ACID TRANSPORTER
Paelopatides19632ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides19633BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides19634NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides1963552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides19636-
Paelopatides19637FI04643P-RELATED
Paelopatides19638PROTEIN CBG26694
Paelopatides19639PROTEIN CBG26694
Paelopatides19640PROTEIN CBG26694
Paelopatides19641CYSTATHIONINE BETA-SYNTHASE
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