About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19683-
Paelopatides19684NITRIC OXIDE SYNTHASE OXYGENASE
Paelopatides19685SNF2/RAD54 FAMILY MEMBER
Paelopatides19686ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19687ES-2 PROTEIN - RELATED
Paelopatides19688ES-2 PROTEIN - RELATED
Paelopatides19689MATRIX METALLOPROTEINASE
Paelopatides19690-
Paelopatides19691METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides19692ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides19693REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19694PEPTIDASE
Paelopatides19695LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides19696CHROMATE REDUCTASE
Paelopatides19697FAM11A, B PROTEIN
Paelopatides19698PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19699UNCHARACTERIZED
Paelopatides19700LP04239P
Paelopatides19701NXPE FAMILY MEMBER
Paelopatides19702REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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