About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19517LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides19518CYCLIN
Paelopatides19519CHAPERONIN
Paelopatides19520UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides19521GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE
Paelopatides19522PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19523REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19524-
Paelopatides19525-
Paelopatides19528ACYL-COA DEHYDROGENASE
Paelopatides19529ACYL-COA DEHYDROGENASE
Paelopatides19530UNCHARACTERIZED
Paelopatides19531ACYL-COA DEHYDROGENASE
Paelopatides19532ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19533PROTEIN CBG26694
Paelopatides19534-
Paelopatides19535ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides19536MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Paelopatides19537RETROTRANSPOSON
Paelopatides19538RETROTRANSPOSON
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