About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19703-
Paelopatides19704-
Paelopatides19705CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19706-
Paelopatides19707-
Paelopatides19708PROTEIN CBG26694
Paelopatides19709-
Paelopatides19710ADENOSINE KINASE
Paelopatides19711CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19712ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides19713-
Paelopatides19714ENZYMATIC POLYPROTEIN-RELATED
Paelopatides19715TETRATRICOPEPTIDE REPEAT PROTEIN 12
Paelopatides19716SUPRABASAL-SPECIFIC PROTEIN SUPRABASIN
Paelopatides19717PROTEIN CBG26694
Paelopatides19718PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19719ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19720-
Paelopatides19721ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19722-
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