About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19723-
Paelopatides19725POL PROTEIN
Paelopatides19726-
Paelopatides19727REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19728L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides19729PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19730REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19731PROTEIN CBG26694
Paelopatides19732PROTEIN CBG26694
Paelopatides19733GAG-RELATED PROTEIN
Paelopatides19734CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19735CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19736FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19739-
Paelopatides19740-
Paelopatides19741RHO GTPASE-ACTIVATING PROTEIN 190
Paelopatides19742MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides19743UNCHARACTERIZED
Paelopatides19744EPM2A-INTERACTING PROTEIN 1
Paelopatides19746FI04643P-RELATED
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