About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20647EPM2A-INTERACTING PROTEIN 1
Paelopatides20648REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20649-
Paelopatides20650ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides20651PROTEIN CBG26694
Paelopatides20652PROTEIN CBG26694
Paelopatides20653F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20654PALMITOYLTRANSFERASE ZDHHC16
Paelopatides20655-
Paelopatides20656-
Paelopatides20657-
Paelopatides20658-
Paelopatides20659REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20660APOPTOSIS-INDUCING FACTOR 1
Paelopatides20661SLR5058 PROTEIN
Paelopatides20662UBIQUITIN
Paelopatides20663UBIQUITIN
Paelopatides20664POL PROTEIN
Paelopatides20665NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides20666-
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