About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20590FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides20591RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides20592REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20593REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20594REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20595DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides20596THAP DOMAIN-CONTAINING
Paelopatides20597ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20598PROTEIN CBG26694
Paelopatides20599PROTEIN CBG26694
Paelopatides20600ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20601-
Paelopatides20603-
Paelopatides20604PROTEIN CBG26694
Paelopatides20605ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20606-
Paelopatides20607FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides20608FI04643P-RELATED
Paelopatides20609GAG-RELATED PROTEIN
Paelopatides20611PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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