About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20931IOJAP SUPERFAMILY ORTHOLOG
Paelopatides20932CYTOCHROME P450 508A4-RELATED
Paelopatides20933HEME-BINDING MONOOXYGENASE FAMILY
Paelopatides20934ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides20935PROTEIN CBG26694
Paelopatides20936ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20945TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides20946-
Paelopatides20947PARANEOPLASTIC ANTIGEN
Paelopatides20948POL PROTEIN
Paelopatides20949-
Paelopatides20950TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides20951REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20952-
Paelopatides20953-
Paelopatides20954-
Paelopatides20955IONOTROPIC GLUTAMATE RECEPTOR
Paelopatides20956-
Paelopatides20957PEPTIDASE
Paelopatides20958TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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