About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21001ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides21002GAG-RELATED PROTEIN
Paelopatides21003-
Paelopatides21004RIKEN CDNA D130052B06 GENE
Paelopatides21005REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21006CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21007REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21008GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides21009-
Paelopatides21010ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21011-
Paelopatides21012RETROTRANSPOSON
Paelopatides21013ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT
Paelopatides21014TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides21015REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21016PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21017AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides21018PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21019-
Paelopatides21020SI:CH211-196P9.1-RELATED
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