About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20959POL PROTEIN
Paelopatides20960ENDONUCLEASE-RELATED
Paelopatides20961-
Paelopatides20962RETROTRANSPOSON
Paelopatides20963PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides20964-
Paelopatides20965ENDONUCLEASE-RELATED
Paelopatides20966ENZYMATIC POLYPROTEIN-RELATED
Paelopatides20967REVERSE TRANSCRIPTASE
Paelopatides20968RAN BINDING PROTEIN 9-RELATED
Paelopatides20969CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20970S-ANTIGEN PROTEIN
Paelopatides20971-
Paelopatides20972FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides20974-
Paelopatides20975PROTEIN CBG26694
Paelopatides20976ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20977-
Paelopatides20978TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides20979PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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