About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21804HEAT SHOCK PROTEIN 70KDA
Paelopatides21805CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21806-
Paelopatides21807KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Paelopatides21808-
Paelopatides21809ZINC FINGER PROTEIN
Paelopatides21810-
Paelopatides21811MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides21812HEMOPEXIN DOMAIN-CONTAINING PROTEIN
Paelopatides21813-
Paelopatides21814ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21815RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides21816-
Paelopatides21817CRUMBS FAMILY MEMBER
Paelopatides21818PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides21819HOMEOBOX PROTEIN ARISTALESS
Paelopatides21820PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides21821-
Paelopatides21822NECTIN-RELATED
Paelopatides21823REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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