About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21741-
Paelopatides21742-
Paelopatides21743ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides21744-
Paelopatides21745-
Paelopatides21746FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21747TRANSPOSABLE ELEMENT-RELATED
Paelopatides21748-
Paelopatides21749SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Paelopatides21750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21751PROTEIN CBG26694
Paelopatides21752PROTEIN CBG26694
Paelopatides21753TRANSPOSON
Paelopatides21754ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21755HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides21756PROTEIN CBG26694
Paelopatides21757PROTEIN CBG26694
Paelopatides21758CENTROSOMAL PROTEIN 2
Paelopatides21759ENDONUCLEASE-RELATED
Paelopatides21760TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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