About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21761-
Paelopatides21762ABC TRANSPORTER B FAMILY
Paelopatides21763PEPTIDASE
Paelopatides21764BC025462 PROTEIN
Paelopatides21765PROTEIN CBG26694
Paelopatides21766PROTEIN CBG26694
Paelopatides21769THO COMPLEX SUBUNIT 1
Paelopatides21770CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21771CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21772-
Paelopatides21773ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides21774PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides21775RETROTRANSPOSON
Paelopatides21776CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21777CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21778-
Paelopatides21779INTEGRIN ALPHA
Paelopatides21780INTEGRIN ALPHA
Paelopatides21781-
Paelopatides21783CXC DOMAIN-CONTAINING PROTEIN-RELATED
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