About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21721SI:CH211-196P9.1-RELATED
Paelopatides21722PARANEOPLASTIC ANTIGEN
Paelopatides21723ATP-DEPENDENT DNA HELICASE
Paelopatides21724DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
Paelopatides21725PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21726RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
Paelopatides21727-
Paelopatides21728-
Paelopatides21729-
Paelopatides21730SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides21731-
Paelopatides21732REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21733ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21734BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides21735FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides21736NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides21737ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides21738-
Paelopatides21739EGALITARIAN, ISOFORM B
Paelopatides21740TRANSPOSASE, PUTATIVE-RELATED
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