About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22042-
Paelopatides22043-
Paelopatides22044-
Paelopatides22045-
Paelopatides22046HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides22047-
Paelopatides22048-
Paelopatides22049-
Paelopatides22050-
Paelopatides22051-
Paelopatides22052ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides22053-
Paelopatides22054TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides22055PROTEIN CBG26694
Paelopatides22056PROTEIN CBG26694
Paelopatides22059-
Paelopatides22060COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides22061PARANEOPLASTIC ANTIGEN
Paelopatides22062POL PROTEIN
Paelopatides22063FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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