About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22019ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22020DIHYDROANTICAPSIN 7-DEHYDROGENASE
Paelopatides22021PROTEIN FAM167A
Paelopatides22022RIBOSOMAL PROTEIN L30
Paelopatides22023-
Paelopatides22024NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Paelopatides22027RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides22028-
Paelopatides22029REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Paelopatides22030ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22031-
Paelopatides22032TRANSPOSON
Paelopatides2203452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides22035-
Paelopatides22036-
Paelopatides22037L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides22038ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides22039-
Paelopatides22040FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides22041-
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