About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22085PROTEIN, PUTATIVE-RELATED
Paelopatides22086PROTEIN, PUTATIVE-RELATED
Paelopatides22088ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22089-
Paelopatides22090L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides22091-
Paelopatides22092TRANSPOSASE, PUTATIVE-RELATED
Paelopatides22093-
Paelopatides22094-
Paelopatides22095DAP3-BINDING CELL DEATH ENHANCER 1
Paelopatides22096-
Paelopatides22097-
Paelopatides22098ARYLSULFATASE FAMILY MEMBER
Paelopatides22099SI:CH211-196P9.1-RELATED
Paelopatides22100MACROGLOBULIN / COMPLEMENT
Paelopatides22101MACROGLOBULIN / COMPLEMENT
Paelopatides22102MACROGLOBULIN / COMPLEMENT
Paelopatides22103CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22106HERMANSKY-PUDLAK SYNDROME PROTEIN 1
Paelopatides22107-
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