About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21979PEPTIDASE
Paelopatides21980UNCHARACTERIZED
Paelopatides21981ENDONUCLEASE
Paelopatides21982-
Paelopatides21983ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21984-
Paelopatides21985RETROTRANSPOSON
Paelopatides21986RETROTRANSPOSON
Paelopatides21987-
Paelopatides21988REVERSE TRANSCRIPTASE
Paelopatides21989BIFUNCTIONAL TH2 PROTEIN
Paelopatides21990-
Paelopatides21991-
Paelopatides21992SODIUM/NUCLEOSIDE COTRANSPORTER
Paelopatides21993ADP RIBOSYLATION FACTOR-RELATED
Paelopatides21994-
Paelopatides21995-
Paelopatides21996ENDONUCLEASE-RELATED
Paelopatides21997-
Paelopatides21998PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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