About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22149-
Paelopatides22152-
Paelopatides22154REVERSE TRANSCRIPTASE
Paelopatides22155RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides22156TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides22157PROTEIN CBG26694
Paelopatides22158ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22159-
Paelopatides22160FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides22161-
Paelopatides22162CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8
Paelopatides22163MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Paelopatides22164-
Paelopatides22165ENDONUCLEASE
Paelopatides22166ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22167PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED
Paelopatides22168-
Paelopatides22169POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
Paelopatides22170PROTEIN CBG26694
Paelopatides22171-
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