About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22128RETROTRANSPOSON
Paelopatides22129RETROTRANSPOSON
Paelopatides22130RETROTRANSPOSON
Paelopatides22131PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides22132PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides22133PARATHYROID HORMONE-RESPONSIVE B1 GENE
Paelopatides22134-
Paelopatides221355'-NUCLEOTIDASE
Paelopatides22136SI:DKEY-276J7.1
Paelopatides22137HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Paelopatides22138WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL
Paelopatides22139U6 SNRNA-ASSOCIATED PROTEIN
Paelopatides22141-
Paelopatides22142PROTEIN CBG26694
Paelopatides22143ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22144PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Paelopatides22145PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Paelopatides22146ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides22147PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
Paelopatides22148-
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