About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22172-
Paelopatides22173TRANSCRIPTION FACTOR MAF
Paelopatides22174-
Paelopatides22175UNCHARACTERIZED
Paelopatides22176-
Paelopatides22178-
Paelopatides22179OPSIN
Paelopatides22180CATION EFFLUX PROTEIN/ ZINC TRANSPORTER
Paelopatides22181-
Paelopatides22182-
Paelopatides22183-
Paelopatides22184NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Paelopatides22185KYNURENINE 3-MONOOXYGENASE
Paelopatides22186B9 DOMAIN-CONTAINING
Paelopatides22187-
Paelopatides22188PROTEIN CBG26694
Paelopatides22189EPM2A-INTERACTING PROTEIN 1
Paelopatides22190ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22191LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides22192SODIUM/CHLORIDE DEPENDENT TRANSPORTER
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