About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22233KELCH PROTEIN
Paelopatides22234-
Paelopatides22235FAST LEU-RICH DOMAIN-CONTAINING
Paelopatides22236ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides22237-
Paelopatides22238NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides22239-
Paelopatides22240T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides22241ENDONUCLEASE-RELATED
Paelopatides22242RETROTRANSPOSON
Paelopatides22243NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides22244-
Paelopatides22245-
Paelopatides22246POLYKETIDE SYNTHASE-RELATED
Paelopatides22247-
Paelopatides22248PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides22249-
Paelopatides22250-
Paelopatides22251TRANSPOSASE, PUTATIVE-RELATED
Paelopatides22252INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
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