About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22762UNKEMPT FAMILY MEMBER
Paelopatides22763-
Paelopatides22764ACTIVATING TRANSCRIPTION FACTOR ATF 4/5
Paelopatides22765-
Paelopatides22766HRAS-LIKE SUPPRESSOR - RELATED
Paelopatides22767ELONGATION FACTOR TU-RELATED
Paelopatides22768HRAS-LIKE SUPPRESSOR - RELATED
Paelopatides22769REVERSE TRANSCRIPTASES
Paelopatides22770DYNACTIN 1-RELATED MICROTUBULE-BINDING
Paelopatides22771-
Paelopatides22772-
Paelopatides22773TYROSINE-PROTEIN KINASE
Paelopatides22774-
Paelopatides22775ACETYLCHOLINESTERASE
Paelopatides22776-
Paelopatides22777TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL
Paelopatides22778PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides22779CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22780-
Paelopatides22781MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
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