About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22802UNCHARACTERIZED
Paelopatides22803UNCHARACTERIZED
Paelopatides22804C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides22805-
Paelopatides22806RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides22807PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides22808-
Paelopatides22809GAG-RELATED PROTEIN
Paelopatides22810-
Paelopatides22811ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides22812-
Paelopatides22813EPM2A-INTERACTING PROTEIN 1
Paelopatides22814-
Paelopatides22815-
Paelopatides22816DNA HELICASE RECQ FAMILY MEMBER
Paelopatides22817REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22818BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides22819SODIUM/CALCIUM EXCHANGER
Paelopatides22820-
Paelopatides22821FI04643P-RELATED
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