About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22782-
Paelopatides22783-
Paelopatides22784EXPRESSED PROTEIN
Paelopatides22785-
Paelopatides22786-
Paelopatides22787ZINC FINGER PROTEIN
Paelopatides22788REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22789SULFOTRANSFERASE SULT
Paelopatides22790EPM2A-INTERACTING PROTEIN 1
Paelopatides22791-
Paelopatides227922-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Paelopatides22793TUBBY-RELATED
Paelopatides22794-
Paelopatides22795INSCUTEABLE
Paelopatides22796INSCUTEABLE
Paelopatides22797CATALASE
Paelopatides22798CATALASE
Paelopatides22799-
Paelopatides22800ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22801-
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