About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14859
Clavulariidae_g1486UNCHARACTERIZED
Clavulariidae_g14860
Clavulariidae_g14861TRANSPOSASE-RELATED
Clavulariidae_g14862HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g14863
Clavulariidae_g14864OS02G0260700 PROTEIN
Clavulariidae_g14865HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g14866
Clavulariidae_g14867OS02G0260700 PROTEIN
Clavulariidae_g14868
Clavulariidae_g14869HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g1487CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14870ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14871DEAD/H RNA HELICASE, PUTATIVE-RELATED
Clavulariidae_g14872PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Clavulariidae_g14873PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14874CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Clavulariidae_g14875ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g14876N-ACETYLGLUCOSAMINYLTRANSFERASE VI
Clavulariidae_g14877
Clavulariidae_g14878PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14879PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1488ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14880RETROTRANSPOSON
Clavulariidae_g14881OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g14882
Clavulariidae_g14883
Clavulariidae_g14884HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g14885COLLAGEN ALPHA
Clavulariidae_g14886
Clavulariidae_g14887FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g14888
Clavulariidae_g14889REVERSE TRANSCRIPTASES
Clavulariidae_g1489ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14890MITOCHONDRIAL CARRIER PROTEIN RIM2
Clavulariidae_g14891UNCHARACTERIZED
Clavulariidae_g14892SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4
Clavulariidae_g14893
Clavulariidae_g14894REVERSE TRANSCRIPTASES
Clavulariidae_g14895ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14896
Clavulariidae_g14897REVERSE TRANSCRIPTASES
Clavulariidae_g14898
Clavulariidae_g14899GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g149DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1490
Clavulariidae_g14900REVERSE TRANSCRIPTASES
Clavulariidae_g14901CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g14902DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
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