About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22822DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN
Paelopatides22823-
Paelopatides22824FIBRILLIN-RELATED
Paelopatides22825ACROSIN-RELATED
Paelopatides22826-
Paelopatides22827RETROTRANSPOSON
Paelopatides22828-
Paelopatides22829-
Paelopatides22830ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22831REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22832-
Paelopatides22833POL PROTEIN
Paelopatides22834-
Paelopatides22835ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides22836GRPE PROTEIN
Paelopatides22837-
Paelopatides22838-
Paelopatides22839-
Paelopatides22840ADP RIBOSYLATION FACTOR-RELATED
Paelopatides22841ZGC:195170
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