About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22963-
Paelopatides22964PROTEIN CBG26694
Paelopatides22965RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides22966ENDONUCLEASE
Paelopatides22969-
Paelopatides22970ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22971ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22972-
Paelopatides22973-
Paelopatides22974REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22975REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22976-
Paelopatides22977WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER
Paelopatides22978REPLICATION PROTEIN A3
Paelopatides22979-
Paelopatides22980LONGEVITY ASSURANCE FACTOR 1 LAG1
Paelopatides22981-
Paelopatides22982CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22983INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22984BASIGIN RELATED
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