About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22942PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides22943FI04643P-RELATED
Paelopatides22944CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22946ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides22947-
Paelopatides22948-
Paelopatides22949PROTEIN FAM47B
Paelopatides22950-
Paelopatides22951RING ZINC FINGER PROTEIN
Paelopatides22952PIKACHURIN-LIKE PROTEIN
Paelopatides22953-
Paelopatides22954-
Paelopatides22955-
Paelopatides22956-
Paelopatides22957-
Paelopatides22958-
Paelopatides22959REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22960TYROSINE-PROTEIN KINASE
Paelopatides22961REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22962MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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