About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22882-
Paelopatides22883-
Paelopatides22884SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN
Paelopatides22885OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides22886-
Paelopatides22887SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN
Paelopatides22888LETHAL 2 GIANT LARVAE PROTEIN
Paelopatides22889ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
Paelopatides22890REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22891TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides22892ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22893HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER
Paelopatides22894CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22895HEME TRANSPORTER HRG1
Paelopatides22896-
Paelopatides22897CELL DIVISION PROTEIN KINASE
Paelopatides22898CELL DIVISION PROTEIN KINASE
Paelopatides22899TRANSCRIPTION TERMINATION FACTOR 2-RELATED
Paelopatides22900ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides22901PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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