About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22862-
Paelopatides22863NOTCH LIGAND FAMILY MEMBER
Paelopatides22864TRANSPOSON
Paelopatides22865METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
Paelopatides22866DNA HELICASE RECQ FAMILY MEMBER
Paelopatides22867FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides22868PROTEIN CBG26694
Paelopatides22869SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides22870-
Paelopatides22871ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22872DNA HELICASE RECQ FAMILY MEMBER
Paelopatides22873-
Paelopatides22874CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22875CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22876COUNTIN RECEPTOR CNR3-RELATED
Paelopatides22877TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Paelopatides22878-
Paelopatides22879GAG-RELATED PROTEIN
Paelopatides22880NEP1/MRA1
Paelopatides22881REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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