About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides2345252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides23453-
Paelopatides23454-
Paelopatides23456TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides23457ENDONUCLEASE-RELATED
Paelopatides23458-
Paelopatides23459REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23460-
Paelopatides23461-
Paelopatides23462GAG-RELATED PROTEIN
Paelopatides23463RETROTRANSPOSON
Paelopatides23464PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides23465ENDONUCLEASE-RELATED
Paelopatides23466POL PROTEIN
Paelopatides23467POL PROTEIN
Paelopatides23470ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23471PARANEOPLASTIC ANTIGEN
Paelopatides23472ENZYMATIC POLYPROTEIN-RELATED
Paelopatides23473PROTEIN CBG26694
Paelopatides23474ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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