About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24697CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24698-
Paelopatides24699REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24700SUCCINATE DEHYDROGENASE
Paelopatides24701PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1
Paelopatides24702S-ANTIGEN PROTEIN
Paelopatides24703ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24704-
Paelopatides24705-
Paelopatides24706NXPE FAMILY MEMBER
Paelopatides24707-
Paelopatides24708PROTEIN CBG26694
Paelopatides24709AGAP011099-PA
Paelopatides24710LEUCINE ZIPPER PROTEIN 4-RELATED
Paelopatides24711-
Paelopatides24712EXOSOME COMPLEX COMPONENT
Paelopatides24713-
Paelopatides24714ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24715ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24716ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4
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