About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24574PROTEIN CBG26694
Paelopatides24575ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24576-
Paelopatides24577-
Paelopatides24578REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24579SMALL VASOHIBIN-BINDING PROTEIN
Paelopatides24580-
Paelopatides24581SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN
Paelopatides24582-
Paelopatides24583ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1
Paelopatides24584PROTEIN CBG26694
Paelopatides24585NADPH OXIDASE
Paelopatides24586-
Paelopatides24587PROTEIN CBG26694
Paelopatides24588PROTEIN CBG26694
Paelopatides24589PARANEOPLASTIC ANTIGEN
Paelopatides24590ENDONUCLEASE-RELATED
Paelopatides24591POL PROTEIN
Paelopatides24592ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24593PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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