About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24635FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24636ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24637-
Paelopatides24638NETRIN RECEPTOR UNC5
Paelopatides24639-
Paelopatides24640PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
Paelopatides24641-
Paelopatides24642ATP-DEPENDENT DNA HELICASE
Paelopatides24643-
Paelopatides24644-
Paelopatides24645CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24646-
Paelopatides24647-
Paelopatides24648-
Paelopatides24649INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides24650TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides24651CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides24652-
Paelopatides24653PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides24654FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
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