About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24615SCAVENGER RECEPTOR CLASS F
Paelopatides24616EPM2A-INTERACTING PROTEIN 1
Paelopatides24617CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED
Paelopatides24618ENZYMATIC POLYPROTEIN-RELATED
Paelopatides24619FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24620FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24621REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24622REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24623REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24624TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides24625-
Paelopatides24626-
Paelopatides24627-
Paelopatides24628TRANSPOSASE, PUTATIVE-RELATED
Paelopatides24629REVERSE TRANSCRIPTASES
Paelopatides24630UNCHARACTERIZED
Paelopatides24631-
Paelopatides24632FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24633-
Paelopatides24634FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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