About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24717REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24718-
Paelopatides24719CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24720FATTY ACID DESATURASE 2
Paelopatides24721HISTIDINE-RICH GLYCOPROTEIN
Paelopatides24722-
Paelopatides24723UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides24724-
Paelopatides24727INTIMAL THICKNESS RECEPTOR-RELATED
Paelopatides24728PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides24729SI:CH211-108C17.2-RELATED-RELATED
Paelopatides24730ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides24731CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24732RETROTRANSPOSON
Paelopatides24733ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides24734CYTOCHROME P450 508A4-RELATED
Paelopatides24735CYTOCHROME P450 508A4-RELATED
Paelopatides24736-
Paelopatides24737CARBON CATABOLITE REPRESSOR PROTEIN 4
Paelopatides24738-
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