About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24865PROTEIN CBG26694
Paelopatides24866-
Paelopatides24868-
Paelopatides24869SI:CH211-196P9.1-RELATED
Paelopatides24870SI:CH211-196P9.1-RELATED
Paelopatides24871NETRIN RECEPTOR UNC5
Paelopatides24872-
Paelopatides24873TRANSPOSON
Paelopatides24874ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides24875RETROTRANSPOSON
Paelopatides24876PROTEIN, PUTATIVE-RELATED
Paelopatides24877PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides24879-
Paelopatides24880-
Paelopatides24881GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 2
Paelopatides24882EPM2A-INTERACTING PROTEIN 1
Paelopatides24883POL PROTEIN
Paelopatides24884UNCHARACTERIZED
Paelopatides24885SINGLE-STRANDED DNA-BINDING PROTEIN
Paelopatides24886-
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