About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24845-
Paelopatides24846-
Paelopatides24847CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24848RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides24849ENDONUCLEASE
Paelopatides24850-
Paelopatides24851PROTEIN CBG26694
Paelopatides24852POL PROTEIN
Paelopatides24853ENDONUCLEASE-RELATED
Paelopatides24854-
Paelopatides24855-
Paelopatides24856MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
Paelopatides24857-
Paelopatides24858-
Paelopatides24859SULFOTRANSFERASE SULT
Paelopatides24860SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24861REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24862UNCHARACTERIZED
Paelopatides24863-
Paelopatides24864-
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