About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24887PROTEIN CBG26694
Paelopatides24888-
Paelopatides24889ENDONUCLEASE-RELATED
Paelopatides24890POL PROTEIN
Paelopatides24891PARANEOPLASTIC ANTIGEN
Paelopatides24892RETROTRANSPOSON
Paelopatides24893RETROTRANSPOSON
Paelopatides24894-
Paelopatides24895-
Paelopatides24896ENDONUCLEASE
Paelopatides24897EPM2A-INTERACTING PROTEIN 1
Paelopatides24898-
Paelopatides24899-
Paelopatides24900-
Paelopatides24901REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24902CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24903CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24904PROTEIN FAM199X
Paelopatides24905LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE
Paelopatides24906EPM2A-INTERACTING PROTEIN 1
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