About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24907EPM2A-INTERACTING PROTEIN 1
Paelopatides24908-
Paelopatides24909LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1
Paelopatides24910GALACTOCEREBROSIDASE
Paelopatides24911ZGC:195170
Paelopatides24912FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24913-
Paelopatides24914PROTEIN CBG26694
Paelopatides24915VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Paelopatides24916WASP-1
Paelopatides24917-
Paelopatides24918INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides24919RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Paelopatides24920CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24921CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24922ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides24923RIBONUCLEASE T2
Paelopatides249245'->3' EXORIBONUCLEASE
Paelopatides24925REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24926-
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