About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14949REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1495MULTI-COPPER OXIDASE
Clavulariidae_g14950REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14951ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14952TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14953REVERSE TRANSCRIPTASES
Clavulariidae_g14954PROTEIN CBG26694
Clavulariidae_g14955PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14956ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14957RETROTRANSPOSON
Clavulariidae_g14958CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14959SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g1496MULTI-COPPER OXIDASE
Clavulariidae_g14960
Clavulariidae_g14961CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14962LIPOXYGENASE
Clavulariidae_g14963REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14965SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14966SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14967SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14968THAP DOMAIN PROTEIN
Clavulariidae_g14969ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1497LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
Clavulariidae_g14970CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Clavulariidae_g14971
Clavulariidae_g14972CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g14973
Clavulariidae_g14974NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g14975
Clavulariidae_g14976EG:EG0003.4 PROTEIN-RELATED
Clavulariidae_g14977DYNEIN REGULATORY COMPLEX PROTEIN 9
Clavulariidae_g14978G PATCH DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14979INTELECTIN
Clavulariidae_g1498RING FINGER PROTEIN 17
Clavulariidae_g14980
Clavulariidae_g14981CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14982
Clavulariidae_g14983RETROTRANSPOSON
Clavulariidae_g14984PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14985
Clavulariidae_g14986MATRIX PROTEIN, PUTATIVE-RELATED
Clavulariidae_g14987RAS-RELATED PROTEIN RAB
Clavulariidae_g14988NFAT
Clavulariidae_g14989TRANSMEMBRANE PROTEIN HTP-1 RELATED
Clavulariidae_g1499ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14990
Clavulariidae_g14991
Clavulariidae_g14992
Clavulariidae_g14993
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