About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25185POL PROTEIN
Paelopatides25186ENDONUCLEASE-RELATED
Paelopatides25187-
Paelopatides25188INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides25192-
Paelopatides25193NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides25194CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25195CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25196THIOPURINE S-METHYLTRANSFERASE
Paelopatides25198-
Paelopatides25199DNA POLYMERASE DELTA SUBUNIT 4
Paelopatides25200ENZYMATIC POLYPROTEIN-RELATED
Paelopatides25201ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25202RETROTRANSPOSON
Paelopatides25203PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides25204CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25205CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25206-
Paelopatides25207POL PROTEIN
Paelopatides25213PROTEIN CBG26694
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