About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25955FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25956L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides25957PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25958RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides25959PROTEIN CBG26694
Paelopatides25960PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN
Paelopatides25962PROTEIN CBG26694
Paelopatides25963PROTEIN CBG26694
Paelopatides25964-
Paelopatides259652-5 OLIGOADENYLATE SYNTHETASE
Paelopatides25966-
Paelopatides25972-
Paelopatides25973FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25974E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER
Paelopatides25977ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides25978FUMARATE HYDRATASE-RELATED
Paelopatides25979SI:CH211-196P9.1-RELATED
Paelopatides25980REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25981BUCENTAUR RELATED
Paelopatides25982RETROTRANSPOSON
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