About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26393REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26394ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
Paelopatides26395-
Paelopatides26396L-CYSTEINE DESULFHYDRASE
Paelopatides26397L-CYSTEINE DESULFHYDRASE
Paelopatides26398REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26399PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides26400REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26401-
Paelopatides26402PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides26403-
Paelopatides26404SERINE/THREONINE-PROTEIN KINASE
Paelopatides26405OS05G0310600 PROTEIN
Paelopatides26406ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides26407-
Paelopatides26408-
Paelopatides26409-
Paelopatides26410SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26411SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26412TYROSINE-PROTEIN KINASE RECEPTOR
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