About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26329-
Paelopatides26330-
Paelopatides26331-
Paelopatides26332MONOCARBOXYLATE TRANSPORTER
Paelopatides26333LD15586P
Paelopatides26336NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides26337HISTONE H2A
Paelopatides26338HISTONE H2B
Paelopatides26339HISTONE H3
Paelopatides26341-
Paelopatides26342MICROSOMAL GLUTATHIONE S-TRANSFERASE
Paelopatides26343MATING RESPONSE PROTEIN POI2
Paelopatides26344MICROSOMAL GLUTATHIONE S-TRANSFERASE
Paelopatides26345-
Paelopatides26346ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides26347PROTEIN CBG26694
Paelopatides26348CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26349CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26350-
Paelopatides26351TRANSPOSABLE ELEMENT-RELATED
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