About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26728GAG-RELATED PROTEIN
Paelopatides26729FI19480P1
Paelopatides26730FI19480P1
Paelopatides26731FI19480P1
Paelopatides26733-
Paelopatides26734-
Paelopatides26735HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides26736-
Paelopatides26737-
Paelopatides26738TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides26739REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26740DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Paelopatides26741DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Paelopatides26742-
Paelopatides26743NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides26744PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides26745COILED-COIL DOMAIN-CONTAINING PROTEIN 175
Paelopatides26747TRANSPOSON
Paelopatides26748GABA-B RECEPTOR
Paelopatides26749-
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