About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27222ZINC FINGER PROTEIN
Paelopatides27223CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27224PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides27225F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27226LORICRIN
Paelopatides27227-
Paelopatides27228FORKHEAD BOX PROTEIN N1
Paelopatides27229-
Paelopatides27230LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72
Paelopatides27231-
Paelopatides27232MATRIX METALLOPROTEINASE
Paelopatides27233-
Paelopatides27234ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27235-
Paelopatides27236MYOSIN REGULATORY LIGHT CHAIN 2
Paelopatides27237LUNG SEVEN TRANSMEMBRANE RECEPTOR
Paelopatides27238LUNG SEVEN TRANSMEMBRANE RECEPTOR
Paelopatides27239CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
Paelopatides27240SI:CH211-196P9.1-RELATED
Paelopatides27241-
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