About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27115EPM2A-INTERACTING PROTEIN 1
Paelopatides27116NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides27117ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides27118EPM2A-INTERACTING PROTEIN 1
Paelopatides27119MDM2-BINDING PROTEIN
Paelopatides27120ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27121PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
Paelopatides27122PHOSPHOFRUCTOKINASE
Paelopatides27123T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED
Paelopatides27124-
Paelopatides27127-
Paelopatides27128NADPH OXIDASE
Paelopatides27129RRM DOMAIN-CONTAINING PROTEIN
Paelopatides27130NADPH OXIDASE
Paelopatides27131NADPH OXIDASE
Paelopatides27132CLEAVAGE STIMULATION FACTOR SUBUNIT 2
Paelopatides27133TRANSPOSON
Paelopatides27134-
Paelopatides27135REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27136-
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